Scaffold AF_2010_repII_A100DRAFT_1003851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AF_2010_repII_A100DRAFT_1003851

Scaffold AF_2010_repII_A100DRAFT_1003851

Overview

Basic Information
Taxon OID	3300000655 Open in IMG/M
Scaffold ID	AF_2010_repII_A100DRAFT_1003851 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Amazon forest - 2010 replicate II A100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2832
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location Name	Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
Coordinates	Lat. (^o)	-10.171667	Long. (^o)	-62.7875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001967	Metagenome / Metatranscriptome	610	Y
F010933	Metagenome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A100DRAFT_10038513	F010933	GGGGG	VWAGSVGSPTVILGIEADAVFQIXLRSIMIPWRTIIDPDDGSHEYKAYVAGVEFYIWRAIGPRFGISARRRLPNGTSEQLTHSGDIEWYDTLEECKARAERILRDHQVRVH*
AF_2010_repII_A100DRAFT_10038514	F001967	N/A	VAWWGLSAVEEFHRYPLRVQQSKLDGWWFIFVDEVGLGVLGPNFEDLLDRLKVLAGNLFRARGETVADVEIVRSEKPALHVFH*

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