Scaffold AF_2010_repII_A1DRAFT_10173119

Overview

Basic Information

• Taxon OID: 3300000597
• Scaffold ID: AF_2010_repII_A1DRAFT_10173119
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 513
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000966	Metagenome / Metatranscriptome	819	Y
F046885	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_101731191	F000966	N/A	FWDPAHWRFRAEESRTIADQMIHEEARTIMRRIAMDYDRLAKLAEAQLIQQATERKT*
AF_2010_repII_A1DRAFT_101731193	F046885	AGAAG	MAQINDFVSDSDGLRLIRAFMRIDVALRRRIVMLVQEIAGDDD*