Scaffold AF_2010_repII_A1DRAFT_10005390

Overview

Basic Information

• Taxon OID: 3300000597
• Scaffold ID: AF_2010_repII_A1DRAFT_10005390
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3501
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043530	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A1DRAFT_100053905	F043530	N/A	FFQAEDGIRDTRVGGGMTDITSFTVYRLEGRAYVIQSAAAKRQSIFEYAVAYKLTDGVYQVTAIDEDDADGATRARYCRRADESPCRISTQKELFAFARATDARQKEEGALVLRLPTDNSEPLR*