Scaffold AF_2010_repII_A01DRAFT_1011177

Overview

Basic Information

• Taxon OID: 3300000580
• Scaffold ID: AF_2010_repII_A01DRAFT_1011177
• Source Dataset Name: Forest soil microbial communities from Amazon forest - 2010 replicate II A01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1448
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location

• Location Name: Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
• Coordinates
  • Lat. (^o): -10.171667
  • Long. (^o): -62.7875

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004262	Metagenome / Metatranscriptome	446	Y
F014722	Metagenome / Metatranscriptome	260	Y
F022271	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
AF_2010_repII_A01DRAFT_10111771	F004262	GGAG	MKRIINGFEVDWASERVFAEQQTAPNYGYLFEVSADRKRIVRCAHSSAIGRDADNPDGDANRLEKNARQAVEEFLGCERESGGLLGWWRRRQKIA*
AF_2010_repII_A01DRAFT_10111772	F014722	GAG	VQTLAEVYEDRAEDYTRTAERTDDLMFRNMLLMLALQWRLAAQEEASKQPTE*
AF_2010_repII_A01DRAFT_10111773	F022271	AGG	MPMMDSRFENRSGSPGGHYSRWPDPWRPEDEWGPITAAVVFFIIILAGLVVYGSGAHL*