NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold AF_2010_repII_A01DRAFT_1004557

Scaffold AF_2010_repII_A01DRAFT_1004557


Overview

Basic Information
Taxon OID3300000580 Open in IMG/M
Scaffold IDAF_2010_repII_A01DRAFT_1004557 Open in IMG/M
Source Dataset NameForest soil microbial communities from Amazon forest - 2010 replicate II A01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2245
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location NameAmazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
CoordinatesLat. (o)-10.171667Long. (o)-62.7875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001064Metagenome / Metatranscriptome789Y
F013343Metagenome / Metatranscriptome272Y
F080635Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
AF_2010_repII_A01DRAFT_10045571F013343N/AFFQAIKGGSLFVLAPVLIGLALTIAAVAYQVIAIRRFQVASKATQENFEIIAADLRKRALEVKKQDEGLRKRDLEAKERDELKVFVKDDNAELTEQPQRSQQQQVLKGSQRALKESVSHIIVVGLDDIQNRMLQTYFTGMTSVVFANSKADLQRKPDEGGLKNDQKSGWQASIQ*
AF_2010_repII_A01DRAFT_10045572F080635GGAGGMTHREHLAQADRFIAECKNRIARQREIIATAYEDGYSTDIPVSMLRVLEENLRSFERHRHLILDQLKNADRQRLARTASPSSVRN*
AF_2010_repII_A01DRAFT_10045573F001064GGGGGMALSLRDVRCDPIANHALNELMHHYTVTQEKSRLVLTKKSGGMKLFLNDLDDLHQWDFMRNQQMVXEIERLHVLLTTTNQKRESWKVRALMAETQLLEATAKTSKNGGRQNVSDVRYASLKRYLAKQLHPDFAPGEGIEKVVRNEIFKEVWNEIGRLDQGVSTTSFAAARSSWAA*
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