Scaffold AP72_2010_repI_A01DRAFT_1009350

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AP72_2010_repI_A01DRAFT_1009350

Scaffold AP72_2010_repI_A01DRAFT_1009350

Overview

Basic Information
Taxon OID	3300000579 Open in IMG/M
Scaffold ID	AP72_2010_repI_A01DRAFT_1009350 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1613
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Amazon Forest, Brazil

Source Dataset Sampling Location
Location Name	Amazon forest, Fazenda Nova Vida, City of Ariquemes, State of Rondonia, Brazil
Coordinates	Lat. (^o)	-10.171667	Long. (^o)	-62.7875	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000284	Metagenome / Metatranscriptome	1378	Y
F071610	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
AP72_2010_repI_A01DRAFT_10093503	F000284	AGGA	MKKLVATIALLCMSSTVLAHDIYSNLRDRDGHLCCGGQDCRPVQAVVLPSGNYYLPESDETIPANMASPSPDDRFHHCTYYPVASEFDRWGYPVWGNKPVTRCFFAPMNSS*
AP72_2010_repI_A01DRAFT_10093504	F071610	N/A	HKIAFIFATVLVVGALMAITTWAAVPKHASDSAAPIAKGTVYRPDLWKVY*

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