Scaffold JGI1357J11328_10094701

Overview

Basic Information

• Taxon OID: 3300000574
• Scaffold ID: JGI1357J11328_10094701
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 954
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.292222
  • Long. (^o): -73.604444
  • Depth (m): 5.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014165	Metagenome / Metatranscriptome	265	Y
F026320	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1357J11328_100947011	F014165	AGGA	MAVAKLKRPKEDRFEELAERIATEIDERAAKMTPEERARADSETKKIAAQVQRRTP*
JGI1357J11328_100947012	F026320	GGCGG	VKKRGDLKDVIREESSRGQKRPINTDAINEQAERRDAVLRILRRGTREDLRALLKAWGYSKEEIEAALKEYDAALGQQSF*