Scaffold JGI1357J11328_10057740

Overview

Basic Information

• Taxon OID: 3300000574
• Scaffold ID: JGI1357J11328_10057740
• Source Dataset Name: Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1452
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location

• Location Name: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.292222
  • Long. (^o): -73.604444
  • Depth (m): 5.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022846	Metagenome	212	Y
F036167	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
JGI1357J11328_100577401	F022846	GAGG	MPLATPEELGEELSELAFDIIEQNWLKAHIGKAVDVKNLDPMQANAAEWELTYLILFAITSGCGTFSATDRDRTTAALKAFHATFLKQIAEQVGTDIVDAHEKNLVPRYRLYGQTLEGEDTTHPYKTRYQRLAEAAAIQILGKPIEDPQAADIFRETIKVIFTE
JGI1357J11328_100577402	F036167	AGGAGG	MRRFTITDIMEGNGQPHPSFTHSATYPVLDVLLPGSGNLPGFLVADDQGRFHLIRMDHCRMGKIEAF*