Scaffold JGI12270J11330_10026154

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10026154
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3502
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F010114	Metagenome / Metatranscriptome	308	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100261542	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGQKSELLLNEQDWEWLNAIDRPFRRTVQHA*
JGI12270J11330_100261545	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTDVSYIDSVGEQLLKWLASVGAGFVAGSVYAFAVCDRLRLSPMQRIAERRKRRHGNNEERSLIRHSLPVEAI*
JGI12270J11330_100261546	F001596	AGGAG	MSWFHSSTAAVDARNYASPSEIVACFQDQRNVLGRLAFLITGDQAMAEQAAVHACEMTLQGNSPFRDWLFEWAKAATIASAISHGTVAIRICEAAYKDRRCPHVEHLSRGDAEERAASLDLILGADAQKLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSHAAVLGANCHAMKWLHDASHATQF*
JGI12270J11330_100261547	F010114	GAGG	MIIELNDDDTRLLYTVLLQQAQEHLSYADTSEVVERLYKLATRFERPVKELPI*