Basic Information | |
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Taxon OID | 3300000567 Open in IMG/M |
Scaffold ID | JGI12270J11330_10016848 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4637 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005312 | Metagenome / Metatranscriptome | 405 | Y |
F009363 | Metagenome / Metatranscriptome | 319 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12270J11330_100168483 | F005312 | AGGA | VVTYRAGDIILPATGNLAADSGKSIFLEESYQQQGNVKTFRWEIPYPCIVELKECPEIPRPSASIKEPREASEESVRQPGALELKNRPA* |
JGI12270J11330_100168484 | F009363 | GGAGG | LAVRICPHCKTEISAPEAAARSNDIVCPKCGTRLEVAPGSRTISTLAGLLAGAIAWRLSSGSPTDLGGTLPTLYAFLAFGVVSPLVLMFTANLRNAPLVPVPEPAHAPSPAGHGAGDHGGGLH* |
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