Scaffold JGI12270J11330_10004198

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10004198
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10252
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002237	Metagenome / Metatranscriptome	579	Y
F004485	Metagenome / Metatranscriptome	436	Y
F030295	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100041982	F004485	AGGAG	MTDREQYAPSPASEAQFWSAHVDALERHLSANTWALAAVTVVLIAYPIARIVIPAVLNGIVPDVVRTVLNLI*
JGI12270J11330_100041985	F030295	GAGG	VSAARLVPGVGLVLLLVCALCAGQSLGDAARQNRQQKKPNGTTTKKVYTTDDMSDPAPALAQGPQDLSGNWSFTHFDDRFQGSITLQQSGSTLQGTWHTSSGKSEPDTLLTGSVDGAAVTLRRSLGPNQQSYALTLSADGNRLDGFGEGYFLHHTNLNMTRSGAAKPATAPPSTAR*
JGI12270J11330_100041988	F002237	AGGA	MLRKLGLAISYFIASVYILSILLPSLYCLQHGCRGPAELDAFLPAFGFTPFGAIATAFSLHNAIQHIRKRQSWSWVFWPLAIIFAVVLLGVIALVAIVIYYTAFHR*