Scaffold JGI12270J11330_10003098

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12270J11330_10003098

Scaffold JGI12270J11330_10003098

Overview

Basic Information
Taxon OID	3300000567 Open in IMG/M
Scaffold ID	JGI12270J11330_10003098 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12045
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003015	Metagenome / Metatranscriptome	513	Y
F077557	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000309810	F077557	N/A	MRFVVEVPDQEVFEAAERPEDLAREIAEVITSEIFDFSSVAVTPERGSL*
JGI12270J11330_100030983	F003015	AGGAG	MNRMLLIVSVVAFFVGGAFARQSSTXPSTPAGNSTAPVSNIATVRGCLDGERGNYIVVEDNSGAVYVLKGVGNKLDNYLHHEVEVKGKMLPGTMKTGVRPEKAGSNPSDTVHGVDGVPLRVGNVDTDVRTISKHCKAADQE*

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