Scaffold JGI12270J11330_10001300

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10001300
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18590
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y
F051636	Metagenome / Metatranscriptome	143	Y
F082025	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000130010	F051636	AGG	MYLEIYAELTKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGVTRKYEPITWESDRVRADYGHLNLDVVVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLLATEDDGEPSPQPTTVALPAVNGFEQRLKDITLKQQDRQRIEAELKLFQAQIGQRVTVKPVTYHNPKTRQDEPAAQVFLEGKSEPLCWVSREHLSAVTRELPGILVSNGKYSLTAICTMPEQGAHS*
JGI12270J11330_1000130012	F004817	AGGA	MPKTIAVVKLPEILGNGSSHSVKLAGKIDSFSLLLCETPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDLGQAPPPKRGKLCETCCFFAGIPEENDSELTVSEALQDLLPVASSRTLRTRTCLHS*
JGI12270J11330_1000130015	F003859	AGGAG	MNEQNAEQHARLECTSTPGRSWSGASLYKSLKLGWNWRRLRWAVAAASEAAQGHEANGVRSGAQEFKTLYNEVAKKVQAYSHESRIPIDTLKAKLPALCAIERLANPEANVPQNRLGLTLGVLVAGVAGSIGMGVLIGLGVGMAHWIARLFA*
JGI12270J11330_1000130016	F016632	AGGAGG	LTGILEAFALAEIGSGIGFLASWRNKVLKAKVNYFRQPNNRSSPFAKVLRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYDAFRQIVRGLALAHSPMRQALRKKGGRPW*
JGI12270J11330_1000130017	F027079	AGGAGG	VIKSFLNLCLLLFLDTLAYMVAIVAAAAVAWAAVCGARRIFAALQNAVTVLKTRQRKKEMCAHTTR*
JGI12270J11330_1000130019	F002761	GGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNTLMVAFVVPIWCRLSRLESRL*
JGI12270J11330_1000130021	F039911	AGGAG	MKYTIAIALAVVVAIAGYFGIRHLTRKDLGFTPLKRYATKLANTLTHTEATAAQEAGASPAA*
JGI12270J11330_1000130022	F005112	AGGAG	MSLVAKYKLFWAACIAALWGLAFWKNSKSYPHKSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLAGQVVARMDRRERNKLAKAA*
JGI12270J11330_100013006	F082025	AGGAGG	MDSNTIFTSLFGGCLKAADKAAAAAINYSKSTVIPGVCNLSRKATLTTGHTLVYVGSKLTDYCTEK*
JGI12270J11330_100013007	F019075	GGAGG	LRCFQPERALIAREIREDRRRELNAMLSQLPQRRAYGVSAPPPLSLEAQFQRSIVDIRQDVQRAKDVQSTHILRWLRS*