NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10094638

Scaffold Draft_10094638


Overview

Basic Information
Taxon OID3300000558 Open in IMG/M
Scaffold IDDraft_10094638 Open in IMG/M
Source Dataset NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24279
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSyncrude, Ft. McMurray, Alberta
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005909Metagenome / Metatranscriptome386Y
F030691Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Draft_1009463814F005909AGGAGMENYSEDITKYPTPDKQYDGAKKYETYESLQTGAMGKAAK*
Draft_1009463821F030691AGGAGMAEPTSGPDAARAQAMRSPATQTSGSSTSGEVAFDVFVKGISQASNDARLALAERLKEAGIWTGKVSSKFDLKYYTALAKLEERYQGQIALDKMIGATTPTKRYDVLTSIISGDAEGGDSGPKTNKQTYVTSASQTAKLLNAVAVDLLERDLTKAEQAKYLKMINAEQRKQPSVQKSSNGSSTTLGPVDEQQFIKEKLQATSEAKTVRATDAYAIMMQEFGGLR*

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