Basic Information | |
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Taxon OID | 3300000558 Open in IMG/M |
Scaffold ID | Draft_10016314 Open in IMG/M |
Source Dataset Name | Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2438 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Syncrude, Ft. McMurray, Alberta | |||||||
Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.55 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001531 | Metagenome / Metatranscriptome | 676 | Y |
F028488 | Metagenome / Metatranscriptome | 191 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Draft_100163141 | F028488 | N/A | KSSXDLDFGYGRKGEXXVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEASYWAFVLEESTLIVPTDALRYAVKEFGREIYV* |
Draft_100163142 | F001531 | AGAAGG | MNWQQIEPWEYVIVSVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVTEWEKIGDKDAKNLIYRSLRNHALDYCQKWKAKSVGYDVSDLYYYESDVVEALLPAVLRGEWGVTHKLNLGRPGRPXAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAIKRLVNKLGGFKPFYDNDIMEPTETEPSEDSSYQELGTPQESEQ* |
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