NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb47_HYPODRAFT_10000325

Scaffold TBL_comb47_HYPODRAFT_10000325


Overview

Basic Information
Taxon OID3300000553 Open in IMG/M
Scaffold IDTBL_comb47_HYPODRAFT_10000325 Open in IMG/M
Source Dataset NameTrout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)63142
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (71.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F052345Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
TBL_comb47_HYPODRAFT_1000032511F021233N/AMSTNKPLRKGLSGLTEPELGMNHDDKFNELHEFAVRAFNWEGKPDEKDMLDSIELIVEQFLHEYIHPAEVIIARFNTDAYLNDAEADRLFLNLQSAIVAIEEEVTRRYLKAQFSYYMLDDKYWDAYRKPVSGTTNDLTARARLETRDDRYFYFVQYAAWRIINDKVQSLKATQRHIQNQIYRRG*
TBL_comb47_HYPODRAFT_100003259F052345AGGMDRRTKEYKELVKMTPTTQELLSEEIDGELYLYKYSPQCKICNTSDDLKNIIDSLLLFPKPYKEVLQAIQPIQDKLGVEGDDRINYENIRNHQKRHLPFEKAIVRDIVERRAKEKNLSILDTSERLLTAEAFYEVIVAKGWEDLASGYNRPTLTQTMAAMEMLRSLEKQANEEYRPEELINQLDMILTAIREVLPADMKEALFRRIEEYQSVDKKKKPATAALPGAEDDIDYIDEDLEEDF*
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