Scaffold LJQas_1046240

Overview

Basic Information

• Taxon OID: 3300000549
• Scaffold ID: LJQas_1046240
• Source Dataset Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 519
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Kamptonema → Kamptonema sp. PCC 6506 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location

• Location Name: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.95744
  • Long. (^o): -3.46336

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057223	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
LJQas_10462401	F057223	N/A	DANTNGFDDSRSRSLVRVGSNELSYANALALLPTNDLLIADSDSNELRIVRDTDADGIPDWLDPVPYYSYRFSDDAPLDITANSRGVVFSHSVGNDTVMLALYDDNHNGYADRDEVVVEGLSIDNNPIFHGLTVDREGTVYVIENAAGTADLVPDGGNLGAPQIDAFPDPALN