Scaffold LJNas_1002704

Overview

Basic Information

• Taxon OID: 3300000546
• Scaffold ID: LJNas_1002704
• Source Dataset Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2104
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location

• Location Name: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.96971
  • Long. (^o): -3.46027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002560	Metagenome / Metatranscriptome	548	Y
F004412	Metagenome / Metatranscriptome	439	Y

Sequences

Protein ID	Family	RBS	Sequence
LJNas_10027041	F002560	AGGAGG	MVEHNPPPSSDSTCLPVIPLPIALYVSGELIFELYDGGQPSRRFSIRWDRLVPTKENEQEAQSPQ
LJNas_10027044	F004412	AGGA	MENERSNAEQALPPEQAAARAAILAECDRLAEAGITFVAVHFDGSGDDGVNEDIKCYATEDYAYEESEAQATNFSHMQEHFETLVPYGYENGCGGFGDVILNVKTRKITVERNDRFEDYTTSNYEV*