Scaffold MLSed_100713

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold MLSed_100713

Scaffold MLSed_100713

Overview

Basic Information
Taxon OID	3300000493 Open in IMG/M
Scaffold ID	MLSed_100713 Open in IMG/M
Source Dataset Name	Lentic microbial communities from White Lake grasslands, BC, Canada
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Pennsylvania State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2992
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Microbial Communities From White Lake Grasslands, Bc, Canada

Source Dataset Sampling Location
Location Name	White Lake grasslands, BC, Canada
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-119.5833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077227	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
MLSed_1007135	F077227	AGGAGG	METITQVRQQLDNLLARIETDQQALAAEQAAVARATEALHETPALQAAIAQGQQIMRGRVLMLIDHQLGLIRESLTAVLLRALRRQVGELEL*

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