NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb48_EPIDRAFT_1059236

Scaffold TBL_comb48_EPIDRAFT_1059236


Overview

Basic Information
Taxon OID3300000439 Open in IMG/M
Scaffold IDTBL_comb48_EPIDRAFT_1059236 Open in IMG/M
Source Dataset NameTrout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1290
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007918Metagenome / Metatranscriptome342Y
F014823Metagenome / Metatranscriptome259N

Sequences

Protein IDFamilyRBSSequence
TBL_comb48_EPIDRAFT_10592362F007918N/AMCDTTLEESDPFLNPEQDMEIGTNQELSSIKQELLSILTNVEALTEAMDRVILKEERRREQFNILCSSINYLFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRDVAIKPDLKSMKIEMEKVLSQQRIEKFQTNPQQEEQRPQKG*
TBL_comb48_EPIDRAFT_10592363F014823N/AMSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRNLLMSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYKQSRSEKEIENLQAIAIAEEKVDLPESLEIL*
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