Scaffold TBL_comb48_EPIDRAFT_1003749

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TBL_comb48_EPIDRAFT_1003749

Scaffold TBL_comb48_EPIDRAFT_1003749

Overview

Basic Information
Taxon OID	3300000439 Open in IMG/M
Scaffold ID	TBL_comb48_EPIDRAFT_1003749 Open in IMG/M
Source Dataset Name	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10005
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051643	Metagenome / Metatranscriptome	143	N
F104306	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_10037491	F104306	AGGA	MPFLSANSYLGIIKEVTSGTLPTTGTPSWIPVSTPQITPQQMFLRDEAFRGSPTTVYDQVQGVRHDEFEFKSYLFADTFPVLAQSILGGADTVTGSTAYTHTIKVLNSASTGSQPPTYSILDFDGANYFTTTASQADSLALTFGAEAAAEATIKYLANPYTSYTSAPTVFASQSLSSEHLIPAWDT
TBL_comb48_EPIDRAFT_10037493	F051643	GGAGG	VSRETVRTQFVNYLNNAGITYLASVKTFPAKFTPEGEFYDNEDPGHATGCIVYPYIEAQREKRIELTGATGGGKKIAYTVVFTCIFRSSKRKTEDAGADSEAFLDSFTNAIRASKNCGGSGPIFQWGEGTTPEAEDIDVVSYYPRQINGSASVTQVVSTVRVTVIEITNSNSYIS*

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