Scaffold TBL_comb48_EPIDRAFT_1000377

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1000377
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35226
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (83.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013252	Metagenome	273	Y
F018653	Metagenome	234	Y
F044303	Metagenome	154	Y
F083483	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_100037714	F044303	GGAG	MKRNHRLAFNALKKIGCPVYERSDVENFQISAEGIYGDYDRDTCWADYYDGRNIPDWEFGINPLITNTLRKYNLHAEWINAGEIGVYED*
TBL_comb48_EPIDRAFT_100037726	F018653	GGTGG	MSNYRYILIDEFGGACRKFASKVEATPYLTAGMVLKALPRVPKDNLYQIALLTLSEAPF*
TBL_comb48_EPIDRAFT_100037745	F083483	GAG	MKKKYNYYKLNVGFFPDVVKLCFDDKVFQQILKDHDVTLKANALDSGIAETHLIGDGKDAIIILVFDISLVNDNIGDLVDTITHEVSHAVDHLAEHIGEEDNFVGETRAYLSGHLAGQIFKICMHEKEKYARKANRTKTKQDGKREQGNEPQIHIQYLGRSGSHSLTELESIIRGAEDDERKGF*
TBL_comb48_EPIDRAFT_10003775	F013252	AGGA	MADELGFKKAYKMTGTPGYAGGPGETTIDKGNSGSKRANNAVLNGNKMAKGSKVGPDKNLKDIGGGNFY*