Scaffold BB_Man_A_Liq_inBBDRAFT_1020475

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BB_Man_A_Liq_inBBDRAFT_1020475

Scaffold BB_Man_A_Liq_inBBDRAFT_1020475

Overview

Basic Information
Taxon OID	3300000422 Open in IMG/M
Scaffold ID	BB_Man_A_Liq_inBBDRAFT_1020475 Open in IMG/M
Source Dataset Name	Marine sediment microbial community from La Parguera, Puerto Rico - BB Mangrove A Sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	630
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Bioluminescent Bay, La Paraguera, Puerto Rico
Coordinates	Lat. (^o)	17.966667	Long. (^o)	-67.0	Alt. (m)		Depth (m)	.39
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078627	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_A_Liq_inBBDRAFT_10204751	F078627	AGGAG	MRHLIQSFESHVGERGCHFYNSESCNFLTWLEVFKLVESLPDVEGSDPFANRLTESLANYNPDVEFLAVQQNDDSLSVELYSQI

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