Basic Information | |
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Taxon OID | 3300000418 Open in IMG/M |
Scaffold ID | P_2C_Liq_1_UnCtyDRAFT_1001685 Open in IMG/M |
Source Dataset Name | Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8082 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Eden Landing Ponds, San Francisco, CA, USA | |||||||
Coordinates | Lat. (o) | 37.569167 | Long. (o) | -122.1019 | Alt. (m) | Depth (m) | .13 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042905 | Metagenome / Metatranscriptome | 157 | N |
F042906 | Metagenome / Metatranscriptome | 157 | Y |
F080057 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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P_2C_Liq_1_UnCtyDRAFT_10016851 | F080057 | AGGA | MLNDEWKKIVADGGMGEEFTAVNTMSQYKIQVALELLEGCSYNCPGCFVKRKGNYNSQSITLFYDLAHELKDRTDIVLDDIVIGPTDFFGAENLYDIINDIRLAQAIFWMPKDNRNIQHNCSILGSLSEKDIQSKIADIEKSALATVVESWDVQIALDLKLLMTDETYRQALKDRVQTFKDSALNYEISMATNVVEGVEDIIYDAINYVRETYSTVIEILPSVVRSFHNGSKHGDKLFQWNDMLTHLSSDVNKFKNKFHFLQGDVSHKAYNYSVINIHNGKLFMSPFIYENAQIYSKDFKIPETVPHVDSIMTYKDSIVKSQIENSTNKECGSCKYLNICANRLIPHVMDTVFK |
P_2C_Liq_1_UnCtyDRAFT_10016852 | F042906 | N/A | MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDVHQLNKAKDFIRDITDRGILVDEILIGPTDFLASENFFEVMPNLLDIINENSPILAFVSTLIDGDIERFCGFITDNVNLDTEIEIGIATNPHKFFDEKYVQHISDMLYYIDQNLKHEVTYTFVVNIKDYGLDYKKLHDQAVNQFNTILDFIPSVSRSHKANIILETLDKFNDYFNVLSKDTTLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYDKMFKVESFDDVLPIVESQLKRAEGTECNDCPLLFSCYNRKIILLRDYLGVNRCIAPRENMLKNIHNYNEPAQTMYKWDGYSVENDKKGYRKKFLVTKDDDPELERIKDISYVK* |
P_2C_Liq_1_UnCtyDRAFT_10016853 | F042905 | N/A | MLVHLNSTYAGYYSYEEDKSPTNIDFLRTEINLDILHGCSQQCPGCFIPRKNLTKADNLETLYNLLIKGSFYPDEITVGPTDIFDAENFDEIMNHPYMKKLYGISGVGFTSTLLQPYAEIRNKLDKIWSLYEGIHRVPDIDFKIVLDIDKYLDGELDDWNRKLKMFELGSVQFRVNYHKDVFKRIGYNDLCQRIFDDYNAPVIITPSFLTDRNARGKVEQHLANFRREMLEQKIDDKWLNLYTFFDARFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPNFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLESCVALKEYMHASN* |
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