NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P_2C_Liq_1_UnCtyDRAFT_1001685

Scaffold P_2C_Liq_1_UnCtyDRAFT_1001685


Overview

Basic Information
Taxon OID3300000418 Open in IMG/M
Scaffold IDP_2C_Liq_1_UnCtyDRAFT_1001685 Open in IMG/M
Source Dataset NameMarine microbial community from Union City, CA, USA - Pond 2C Liquid 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8082
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameEden Landing Ponds, San Francisco, CA, USA
CoordinatesLat. (o)37.569167Long. (o)-122.1019Alt. (m)Depth (m).13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042905Metagenome / Metatranscriptome157N
F042906Metagenome / Metatranscriptome157Y
F080057Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
P_2C_Liq_1_UnCtyDRAFT_10016851F080057AGGAMLNDEWKKIVADGGMGEEFTAVNTMSQYKIQVALELLEGCSYNCPGCFVKRKGNYNSQSITLFYDLAHELKDRTDIVLDDIVIGPTDFFGAENLYDIINDIRLAQAIFWMPKDNRNIQHNCSILGSLSEKDIQSKIADIEKSALATVVESWDVQIALDLKLLMTDETYRQALKDRVQTFKDSALNYEISMATNVVEGVEDIIYDAINYVRETYSTVIEILPSVVRSFHNGSKHGDKLFQWNDMLTHLSSDVNKFKNKFHFLQGDVSHKAYNYSVINIHNGKLFMSPFIYENAQIYSKDFKIPETVPHVDSIMTYKDSIVKSQIENSTNKECGSCKYLNICANRLIPHVMDTVFK
P_2C_Liq_1_UnCtyDRAFT_10016852F042906N/AMPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDVHQLNKAKDFIRDITDRGILVDEILIGPTDFLASENFFEVMPNLLDIINENSPILAFVSTLIDGDIERFCGFITDNVNLDTEIEIGIATNPHKFFDEKYVQHISDMLYYIDQNLKHEVTYTFVVNIKDYGLDYKKLHDQAVNQFNTILDFIPSVSRSHKANIILETLDKFNDYFNVLSKDTTLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYDKMFKVESFDDVLPIVESQLKRAEGTECNDCPLLFSCYNRKIILLRDYLGVNRCIAPRENMLKNIHNYNEPAQTMYKWDGYSVENDKKGYRKKFLVTKDDDPELERIKDISYVK*
P_2C_Liq_1_UnCtyDRAFT_10016853F042905N/AMLVHLNSTYAGYYSYEEDKSPTNIDFLRTEINLDILHGCSQQCPGCFIPRKNLTKADNLETLYNLLIKGSFYPDEITVGPTDIFDAENFDEIMNHPYMKKLYGISGVGFTSTLLQPYAEIRNKLDKIWSLYEGIHRVPDIDFKIVLDIDKYLDGELDDWNRKLKMFELGSVQFRVNYHKDVFKRIGYNDLCQRIFDDYNAPVIITPSFLTDRNARGKVEQHLANFRREMLEQKIDDKWLNLYTFFDARFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPNFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLESCVALKEYMHASN*

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