Scaffold LV_Brine_h2_0102DRAFT_1013931

Overview

Basic Information

• Taxon OID: 3300000405
• Scaffold ID: LV_Brine_h2_0102DRAFT_1013931
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1659
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002402	Metagenome	563	Y
F014810	Metagenome	260	Y
F079423	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
LV_Brine_h2_0102DRAFT_10139312	F014810	N/A	MSVLSDNFGIILSSTLGALGTLFGFLKGKKSRESNANIEIGKAYELMARQNNAFIITMTEKIEKQTTKIEHLEFEVIGLRNENKLLLTELKKYRKK*
LV_Brine_h2_0102DRAFT_10139313	F002402	N/A	MYYKGTKTKCEAYNTKVTLGENYQGSTTSWANVTSNQNGQGFAILKHENYKSEMTLIDKIPNSWYNNLEL*
LV_Brine_h2_0102DRAFT_10139315	F079423	N/A	LRYNSHNNLASLGQFGIRKLGNDDESIPGEKFMAVYANVDSDFTVASTSGGDASFTVTLLAGGSLVGPYKNITGLTGNILCFKSDEL*