Scaffold LV_Brine_h2_0102DRAFT

Basic Information
Taxon OID	3300000405 Open in IMG/M
Scaffold ID	LV_Brine_h2_0102DRAFT_1000877 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000405 Open in IMG/M

Scaffold ID

LV_Brine_h2_0102DRAFT_1000877 Open in IMG/M

Source Dataset Name

Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	9497
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9497

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Vida, Antarctica

Coordinates

Lat. (^o)

-77.38861

Long. (^o)

161.931111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003224	Metagenome / Metatranscriptome	499	N
F006056	Metagenome	382	N
F023240	Metagenome	211	N
F038569	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
LV_Brine_h2_0102DRAFT_100087710	F038569	GGAGG	VKSIKIYTWTRHPKRWSPRKSQHRQSIPKWPMKPNGPGLSSAPNSKGKAVNFADVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQTIQPGFRNGGESLADVAAKVDLISAKLGL*
LV_Brine_h2_0102DRAFT_100087715	F003224	AGG	MTESLFDSIGDMQLDRPGHYCTGQLCTYCERYDREDAQVLADIDKNWRVQATIFRKSLAIGGLFTADLLIDSIGLPDGHPNQIGALFRSWSSMGVITSMGNYVTSTRESNNGRSIRMWKRTA*
LV_Brine_h2_0102DRAFT_100087716	F023240	N/A	MIIMGDYLEGYVQALTNVLDDIEVEKCETVSDVRRMIRQMIDDEGSE*
LV_Brine_h2_0102DRAFT_10008777	F006056	N/A	MTLQITLAGSVIDLDLFEYNVTIAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVARFTGAISDLDVSFISTTNPTAITTITAMGNLAKLGYTDVGATGYVEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPSTALDALARIAQGTGATYYDDPQGRIIFEDYGNRGSTTFPGIWANQTGTWSEAEGTWADYPLSPASFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASIIQYGRREYRLETDIKTISDATERAAGIMTAQANGLWNLGQISVLVDQLNPADTDKLLDLVSGSLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWSQVGPGAQWFEIITQSDLVRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold LV_Brine_h2_0102DRAFT_1000877

Overview

Ecosystem & Geography

Associated Families

Sequences