Scaffold BB_Man_B_Liq_inBBDRAFT_1010274

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1010274
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1334
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_10102741	F006109	N/A	VEDRWVTAIYGPGKGIGLTASKEDASSWVTYERAVAAARAVAESFNSFASVHSVDEPAYPRSWK*
BB_Man_B_Liq_inBBDRAFT_10102742	F017122	GAG	MEVVPFQEQLSPELRLGEGRSRTSSEKAMLFELKIWLPGQGAMRDLVRAESLKQAITFATNRYPNCKVEVPETAAKKPRLVRSKSGRREAARRRLKIVEDKREQT*
BB_Man_B_Liq_inBBDRAFT_10102743	F043896	GGAGG	VSKPDVPEWAHRNWGRVIVDQNRADLLDKLYEWDGRDNPEHPHHHTYTGLYQKFTAF*
BB_Man_B_Liq_inBBDRAFT_10102744	F003805	AGG	MRPIEHSTESSFHKAAQDKWLVDLFNRQDYRGLLEAALVLNTLHQIERTKSAWAIREAADNLADQFGLDRDSA*