Scaffold BB_Man_B_Liq_inBBDRAFT_1007771

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1007771
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1641
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrospira → Thiomicrospira microaerophila (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017645	Metagenome / Metatranscriptome	239	Y
F054884	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_10077712	F017645	GGAGG	MRFINFFALLAIISFANAMTYGDSKKSHPREVDTYITGVIDGLEFSQKLLESSQMAFYCKPKNLQLTMGNAKNFIENTARDMRIAGYIPENYELSFLIFDGLKTTFPCNQAMQEGAPQSQY*
BB_Man_B_Liq_inBBDRAFT_10077713	F054884	AGG	MSLNSKVMKDSKENELDFLEAAIEFEDTIIRYRLIPKEEVEGLDVMGNYYLFTIQQKHIKKFLNSFCEINGLPEVGDRLKLHTQAFSIEIVELLPA*