Scaffold BB_Man_B_Liq_inBBDRAFT_1005469

Overview

Basic Information

• Taxon OID: 3300000401
• Scaffold ID: BB_Man_B_Liq_inBBDRAFT_1005469
• Source Dataset Name: Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2093
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.966667
  • Long. (^o): -67.0
  • Depth (m): .39

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
BB_Man_B_Liq_inBBDRAFT_10054692	F006109	GAGG	MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAVAAARAVAESFNSFASVHSVDEPAYPKSWK*
BB_Man_B_Liq_inBBDRAFT_10054693	F022403	AGGAG	MPLRHGSKLYCQLLLDEHRYKLAEKLAAQEGKRVTALLREMVYAGLEKAVPASDYKAAEAADRATWAESVQRRVQGRMRSKQQGKVSETDA*
BB_Man_B_Liq_inBBDRAFT_10054694	F004722	N/A	MSRSRTGREIVMEWLMREIRAAKTSDLQRAAAFLEWARGIRKGSRQQRTSARVAQSNSWRKGVDEDVRWRV*