Scaffold SS_2KS_010_SOILDRAFT_10015556

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SS_2KS_010_SOILDRAFT_10015556

Scaffold SS_2KS_010_SOILDRAFT_10015556

Overview

Basic Information
Taxon OID	3300000367 Open in IMG/M
Scaffold ID	SS_2KS_010_SOILDRAFT_10015556 Open in IMG/M
Source Dataset Name	Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3271
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe
Coordinates	Lat. (^o)	52.1	Long. (^o)	79.14	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036417	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
SS_2KS_010_SOILDRAFT_100155563	F036417	N/A	MVYFARVPIRTMIPTVLVQLATDDGDIMFRARWKRSPLELQRLILFRMRRGKPLWFEDDRGHDLCFRPEAVRAALVDGRR*

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