NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_101854372

Scaffold INPhiseqgaiiFebDRAFT_101854372


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_101854372 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1019
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F000805Metagenome / Metatranscriptome883Y
F001079Metagenome / Metatranscriptome785Y
F021376Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1018543721F000805N/AAHQYYEYLQSHQQTWQVPATWHIKWLDLAWLWGFLVALGLIILWWLWQYRSTRQRGIYPTDQFGGYTSEAAGPATRFFLLFTVIVTGWAIALIVGHLVWGQKF*
INPhiseqgaiiFebDRAFT_1018543722F001079AGAAGMAATESPVPSVLPYVSWSSLTIAAIPADAWPQVFGSMQALKGHGQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPEQLEAFLERGYTFERMLHDVAGITAQPTLVMEKIF*
INPhiseqgaiiFebDRAFT_1018543723F000280GGAGMAAQEPDRAPAPARPLVGYRDVGEDVRHSRSSMIRAWIILAVLIAFYLGWTLVVFFLEPGLR*
INPhiseqgaiiFebDRAFT_1018543724F021376N/AVYVKHLTSLQFLTYVAFFAVVIAAMFRFIPGKAPPVRTEPYSEDELGAHDRKTAKYFV
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