Scaffold INPhiseqgaiiFebDRAFT_101490398

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold INPhiseqgaiiFebDRAFT_101490398

Scaffold INPhiseqgaiiFebDRAFT_101490398

Overview

Basic Information
Taxon OID	3300000364 Open in IMG/M
Scaffold ID	INPhiseqgaiiFebDRAFT_101490398 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1397
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004875	Metagenome / Metatranscriptome	420	Y
F013683	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_1014903981	F004875	N/A	RIFSRFAFAILHACALICMVLLLSKLEWNGGSRGHHFLCQAEACWAEGHEFQAGDYLFDNAVPGSVSIHREGTNSAIGVSVILYSVPSERENPRVIFVRRDEKYFLVELWGVQDRHVVTAEFQHRGAVSEQQRQVPLTIVE*
INPhiseqgaiiFebDRAFT_1014903982	F013683	AGGA	MEFNEYDFTRNPVVQNEVFFLQSKCTACGFSILVRSVEELVEHEKLHRTQCSPSNAAA*

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