Scaffold INPhiseqgaiiFebDRAFT_100822638

Overview

Basic Information

• Taxon OID: 3300000364
• Scaffold ID: INPhiseqgaiiFebDRAFT_100822638
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11958
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004357	Metagenome / Metatranscriptome	442	Y
F042593	Metagenome / Metatranscriptome	158	Y
F058483	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
INPhiseqgaiiFebDRAFT_10082263810	F058483	N/A	MNDVLSGALIGAVFGYLIARHSSEIEWILHMLIG*
INPhiseqgaiiFebDRAFT_10082263812	F042593	GGAG	MSTRSVGVSRFVAAAGATVITAVSAWAFVSSTTSIDRDPFQFASIMAANAKVRIAQVYSHSASTCPHNPEVRDPRAPVCLGG*
INPhiseqgaiiFebDRAFT_1008226387	F004357	N/A	MSTPNSELDKHLQALFGGLDTRADFDVRLMARLRAESQTAATERAMRTREQERARYRRAVSELQTWRRSMLRMLTLDTLGIALLLVAAIVTAWPHVRQDVMDISRQYAPYIAMSLGVLIAAVPLLAMWAEQTRRPVRLL*