Scaffold SL_1KL_011_SEDDRAFT_10013152

Overview

Basic Information

• Taxon OID: 3300000362
• Scaffold ID: SL_1KL_011_SEDDRAFT_10013152
• Source Dataset Name: Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 1KL_011_SED
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4745
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location

• Location Name: Russia: Kulunda Steppe, Cock Lake
• Coordinates
  • Lat. (^o): 52.06
  • Long. (^o): 79.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045771	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_1KL_011_SEDDRAFT_100131523	F045771	N/A	MTRRVFLDTEWTGPPWSSRSQPMWIGLADEGGRSWYGISSEANIDPSTNDFIAGVFRLITPDEPRLTHQELAAAIIAFCGDVDEFWAWRALSG*