Scaffold EM177

Basic Information
Taxon OID	3300000357 Open in IMG/M
Scaffold ID	EM177_1000760 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Cork, Ireland - EM177
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Macrogen
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000357 Open in IMG/M

Scaffold ID

EM177_1000760 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Cork, Ireland - EM177

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI), Macrogen

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9483
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

9483

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location
Location Name	Cork, Ireland
Coordinates	Lat. (^o)	51.907	Long. (^o)	-8.472	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Cork, Ireland

Coordinates

Lat. (^o)

51.907

Long. (^o)

-8.472

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F055739	Metagenome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
EM177_10007605	F055739	AGGAGG	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLNRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECNGKMYRFDPLDVYGGDFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGVGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
EM177_10007607	F043413	AGGGGG	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGRPYALEIEGCGGGDFMSGMFLPDETGSWSDSPFAFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYRYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIDMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold EM177_1000760

Overview

Ecosystem & Geography

Associated Families

Sequences