Scaffold Cc92DRAFT_1006006

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Cc92DRAFT_1006006

Scaffold Cc92DRAFT_1006006

Overview

Basic Information
Taxon OID	3300000303 Open in IMG/M
Scaffold ID	Cc92DRAFT_1006006 Open in IMG/M
Source Dataset Name	CECUM_9-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University College Cork
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11287
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (20.83%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Source Dataset Sampling Location
Location Name	Ireland: Cork
Coordinates	Lat. (^o)	51.897783	Long. (^o)	-8.470613	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053097	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Cc92DRAFT_10060067	F053097	N/A	MFDIKGDKIVFSTQDLAIPPFKEFYNNAKDKNLAKKQLEYVIWRYKWNTPYEAYPESERSERVALDVFGTNYEPDASVKELIKRFNEF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.