Scaffold LP_A_09_P04_500DRAFT_1005632

Overview

Basic Information

• Taxon OID: 3300000264
• Scaffold ID: LP_A_09_P04_500DRAFT_1005632
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_500
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, Station P4
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040871	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_500DRAFT_10056325	F040871	AGG	MSTNDRLEVLETKLKHIGMMGQWYQRYDISKSAEECKEIIKEVKEELNEPCGMSRK*