Scaffold LP_F_10_SI03_100DRAFT_1007871

Overview

Basic Information

• Taxon OID: 3300000257
• Scaffold ID: LP_F_10_SI03_100DRAFT_1007871
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2363
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024225	Metagenome	207	Y
F036475	Metagenome	170	N
F071255	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_100DRAFT_10078714	F036475	AGGA	MTPLQKLTLEILNDCMSIVEKRVSNPVYKKVIVSMGYPYAKKEILRTSDEELKKDMNLVYNRLKKHFKKKELKDEIDFSNKISDIKVPEFISKPVGDYF*
LP_F_10_SI03_100DRAFT_10078715	F024225	GGGGG	LKVNFTTNNLDEKLYEKSILTYIYDHYLFDDYRRIMEQDKWVINVRKLTDFDWNFYDKEIKNLSKKIPHGVTGNNVIECYVDDENNRMYYMQNMMVICHELSHMLLKIYYPDTRGVLLYDDLWGKKGDMRNYFSTEIHNRVHEGKTRKFKAFHLNKEYYFYGVDIDDITNKRNLNNGV*
LP_F_10_SI03_100DRAFT_10078716	F071255	N/A	MVLDMSDNDNNDSSAFTIGELSGKLKDEFSSEFSGIKNSISDLSQKMNLSDKETDGLTNVSDFVQHLNDCDNPNCEIHKSINTTANNSYMKGFLLGAKFGKQKRN*