Scaffold LP_F_10_SI03_135DRAFT_1053747

Overview

Basic Information

• Taxon OID: 3300000255
• Scaffold ID: LP_F_10_SI03_135DRAFT_1053747
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 573
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_135DRAFT_10537471	F007003	AGGA	MINFYTKNIDTNRYTDIVCRTIMLNGSNGKHLSGYYAWENFKDNWELNIIPTTKQEEFKKFYEHLDIETSDGIAWGVTGKKVIYMFVNDSKNPFILRSNIMPLAHELLHAVYQDGIGTHHITRKYDAPEGRAGTKGAAATVIVHDNWYGSKKTIKFWIRHKFI