Scaffold LP_F_10_SI03_135DRAFT_1011322

Overview

Basic Information

• Taxon OID: 3300000255
• Scaffold ID: LP_F_10_SI03_135DRAFT_1011322
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2131
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. SG-bin2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036653	Metagenome / Metatranscriptome	169	Y
F045801	Metagenome / Metatranscriptome	152	N
F073426	Metagenome	120	Y
F103382	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
LP_F_10_SI03_135DRAFT_10113222	F045801	GGAG	MFWIEIILSIWALIAIRLLAIGHKLGPLVGWVGQVLWVSMWIFTEQYGFILIDTGLAYIYLEAYFRGKGRC*
LP_F_10_SI03_135DRAFT_10113223	F103382	N/A	MNELIITIMLVIPAPHKMVDWTINEVPTQIQLIHEDGTEVSYNATAVPCDYKPRSTNEMVFVSPQAYEDNRCYSIFDLSSPRFIRHPHYWHGVKNVLD*
LP_F_10_SI03_135DRAFT_10113224	F036653	GGAG	MTVILVTIGIVLSMFVYEPLWFDTRMHYYHNTYQSEKACNHAAIQVEETTGRVCVPKDNHSGHVDLYLTHE*
LP_F_10_SI03_135DRAFT_10113225	F073426	GGGGG	MTRLYIVLVLTVFLALFYFSYKAPVLVSVPKVEKAINMGIWSESNKGNSLAEK*