Scaffold LPjun08P16500mDRAFT_1005129

Overview

Basic Information

• Taxon OID: 3300000251
• Scaffold ID: LPjun08P16500mDRAFT_1005129
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P16 500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2036
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F018265	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
LPjun08P16500mDRAFT_10051292	F018265	GAG	MSMEMHTLRAVKLTQNIFAINRVNRELVIVRKIVEDLEQRKMELMSS*
LPjun08P16500mDRAFT_10051297	F000615	GAG	MCRIRCFYECSDGEMGFAEMVVSYEEDIAGLIRHWGTGGRMVITEHIDLV*