Scaffold LPfeb09P261000mDRAFT_1041725

Overview

Basic Information

• Taxon OID: 3300000250
• Scaffold ID: LPfeb09P261000mDRAFT_1041725
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 647
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: P26, Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050676	Metagenome / Metatranscriptome	145	N
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
LPfeb09P261000mDRAFT_10417251	F050676	N/A	KLPVKSRVADKYQPMLTYYAELIGLCHETVAKTQSLQMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLETISKTNEQRSHVA*
LPfeb09P261000mDRAFT_10417252	F054358	AGGAG	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKEEISHSLLKEPDELDRLLKKL