Scaffold BS_KBA_SWE21_205mDRAFT_10027578

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BS_KBA_SWE21_205mDRAFT_10027578

Scaffold BS_KBA_SWE21_205mDRAFT_10027578

Overview

Basic Information
Taxon OID	3300000241 Open in IMG/M
Scaffold ID	BS_KBA_SWE21_205mDRAFT_10027578 Open in IMG/M
Source Dataset Name	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 21_20.5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1478
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location Name	KBB site, Vaertahamnen, Baltic Sea, Sweden
Coordinates	Lat. (^o)	59.350163	Long. (^o)	18.107847	Alt. (m)		Depth (m)	20.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019130	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
BS_KBA_SWE21_205mDRAFT_100275781	F019130	N/A	DAKRHHESQLRSLKGLLSYLRRSLPIESNKITGRNYEFTLIKKKELTVEIESDPDVWQAEERTDYCIEQEVTTTKRIVLRSMSGEVLEERTEPSIKTTVVPNLDAIRSAYQTGRLLPTGVKVLQEYSIRSKRIYDKRGMELEASEYSGQFLPED*

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