NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SI36aug09_100mDRAFT_1027294

Scaffold SI36aug09_100mDRAFT_1027294


Overview

Basic Information
Taxon OID3300000238 Open in IMG/M
Scaffold IDSI36aug09_100mDRAFT_1027294 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet 36, Vancouver Island, BC, Canada
CoordinatesLat. (o)48.5663346Long. (o)-123.5193257Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064227Metagenome129N
F103274Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
SI36aug09_100mDRAFT_10272941F103274AGGAGGMADIQEKNPEVEIDTTGVNEQTIEVDAPKVSDEAFEKKQEVDLGYVDV
SI36aug09_100mDRAFT_10272943F064227N/AVDTMEKLQYVRGQIRSLEDLQQDLKDLLTTTEYDDEQVHGDTETD*

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