Scaffold TB_PC08_3DRAFT_1027538

Overview

Basic Information

• Taxon OID: 3300000235
• Scaffold ID: TB_PC08_3DRAFT_1027538
• Source Dataset Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1473
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location

• Location Name: Pozzo dei Cristalli, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y

Sequences

Protein ID	Family	RBS	Sequence
TB_PC08_3DRAFT_10275382	F002045	N/A	MVNKEDSRMNFFCVYCKTRKKFDKFIKVNAIKNKYIIDINKIMTEEEVDFNDDKTYLKIIIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEILDDVFSNLSKFSNSQIIRDY*