NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TB_GS09_5DRAFT_10002270

Scaffold TB_GS09_5DRAFT_10002270


Overview

Basic Information
Taxon OID3300000234 Open in IMG/M
Scaffold IDTB_GS09_5DRAFT_10002270 Open in IMG/M
Source Dataset NameGroundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS09_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19888
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location
Location NameGrotta Sulfurea, Talus Pool, Frasassi Caves, Italy
CoordinatesLat. (o)43.383333Long. (o)12.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F032658Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
TB_GS09_5DRAFT_1000227013F002045N/AMIVKEESKMNFFCVYCRTRKKFDKFIKVNAIKNKYIIDINKIMTEEEVDFNDDKTYLKIIIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEIIDDVFSNLSKFSNSQIIRDY*
TB_GS09_5DRAFT_1000227020F032658N/AMRKIEKFNNFNLIKEEASPRLPKSEDYWLKKGKIGKKVALYIHDDMDGMFSGIEMKKYLLNAGFTIEKYGILNYTEGWKYTTLDPKLINVVLDFANMPGDERDDMIDYYLDHHGIFTPEELEKYKSSPVQKKKTGSAYEAICQSLGVPQDSLTLDVIDMIDSAKYQDYGVDWQRLLDFNLSDIKKSDKKRLEFGAAFNQFLKRSDSKTIISVIENCPDASIYSIFNVMKKVYPEHNQIMTGYRKGQKKDFIEDSKWRLGEMQKRTRGLNPDEKVTFTSQSDFIQKFKKGNLIRVDGYQKIGDLVFVPTGTWANALRARTIVERDFMDGKIDSEPKFILLQYGGTLQVCSYKKMEEMGGELPILKNGKEVSDLGKYMTELLGNFQKHLGYHNPDTTLGQDEITVSGGHGGIGSISNVFGECTIEPYVGQRYVDMFKNKIITDLSGVPFNLNLKWSEPVEFNPKEPEMNNKVIDIDDVTKLDKQGNIIQQESYEYNLIDKTGNTKTVTKEDFVKAGVNKRMKANSVTIDNDNKKVIANFEKFNYKK*
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