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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000231 Open in IMG/M |
| Scaffold ID | TB_LI09_4DRAFT_10024115 Open in IMG/M |
| Source Dataset Name | Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2710 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lago Infinito, wall in 6.8 m depth, Frasassi Caves, Italy | |||||||
| Coordinates | Lat. (o) | 43.383333 | Long. (o) | 12.95 | Alt. (m) | Depth (m) | 6.8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030143 | Metagenome / Metatranscriptome | 186 | Y |
| F056343 | Metagenome / Metatranscriptome | 137 | N |
| F098715 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TB_LI09_4DRAFT_100241151 | F098715 | N/A | VASIGSVHRWQGSPTDLDRVKLPALFFWDEDETRDKRNRLAMGTLKLYVAIFCRLSPSGAASFPDVADNLQGAIHNALLGTSELKGLVENLQEERVWKEFPNDQYGVLFMSFTLTYAHAWGDAFSTTY* |
| TB_LI09_4DRAFT_100241153 | F056343 | AGGAG | MPNEITDHQVLGSYLAEEQINGFTVKPWTIKQLILVMPILDALVQELKNQGVTLDNLGEMFESQGLAAAKDIIQTILPRLPEFLAITLRIDREQAEELDLGLGLQLAVKVLRMNVDHLKNAFGLIMSQVGVLIGPEATP* |
| TB_LI09_4DRAFT_100241154 | F030143 | N/A | LASQGHDLYQLIDGYPALMVKGLVAASQVRSRHRLMEQGVSMTVAVTGGLDLALNQGKGKVLERWLKEMAGEEKSEPPEEKPKLSDRAFSFFASMPRQGPDRPAREK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |