Scaffold TB_LI09_4DRAFT_10013635

Overview

Basic Information

• Taxon OID: 3300000231
• Scaffold ID: TB_LI09_4DRAFT_10013635
• Source Dataset Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3743
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location

• Location Name: Lago Infinito, wall in 6.8 m depth, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Depth (m): 6.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002400	Metagenome / Metatranscriptome	563	Y

Sequences

Protein ID	Family	RBS	Sequence
TB_LI09_4DRAFT_100136355	F002400	AGGAG	VRKTKASVSKPAVCEHCAGTALVRRITTYPVRLTGPGDLAGKEIHVHRVALHQCQSCQHLMPTPAGWAKVERCVANGIALFLGLLH*