Scaffold TB_LI09_3DRAFT_1010727

Overview

Basic Information

• Taxon OID: 3300000229
• Scaffold ID: TB_LI09_3DRAFT_1010727
• Source Dataset Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- LI09_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2472
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Source Dataset Sampling Location

• Location Name: Lago Infinito, wall in 7.1 m depth, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Depth (m): 7.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
TB_LI09_3DRAFT_10107272	F090244	N/A	MDVESRIFEKLDKIEDRITDLCIRLSAIETEYRDHITEIQHEQDKKLRRRDYILVIMGMGITIIELGRTLGVI*
TB_LI09_3DRAFT_10107273	F049294	N/A	MAGNLRYYALGAYAGLIALWTVTGKLAMDETAIIALLAPIAVVIGADYIKHKDDGKE*
TB_LI09_3DRAFT_10107274	F037175	N/A	MLNFYTKNVNKDFVSQIMYHTLSNLKVKDLTGWLKKWDIHIWDLKSTNPQFFLHIPTTSGQKINPDMPSGVTGKYRMDLWLHDSNNEFKQRENSDRIMHEVCHTVLYGTPHFVSGVHDNVNKRFSVSFHYRDKLIYKKFVLSIIDIKQYL*