Scaffold SI34jun09_10mDRAFT_1005229

Overview

Basic Information

• Taxon OID: 3300000224
• Scaffold ID: SI34jun09_10mDRAFT_1005229
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3204
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet 34, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F084734	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
SI34jun09_10mDRAFT_100522910	F005796	AGGAG	MLEYAVFTFCLIGCGLTCHALGKQEGIESTIEHLVDNGMIELDEE*
SI34jun09_10mDRAFT_10052294	F047922	GAGG	MNPQEVSDHKRKWMMASYFESHVHTDNRSLVIEWCKDHCFQWRYDIKRFTDIYGDTVRFELEEDFTAFNEWYKDRGL*
SI34jun09_10mDRAFT_10052296	F025150	GGAG	MINVYTEGKCLKDYTTFIDECIMALFPEDAQYDIYIEAEKFVDDDGTHAGFCXGDSKDCVISLATHWVYEDGEEIAYEPHELASNXAHELVHAKQFCKEQINMIDNVWXHNNLILNCDEXDYEELPWEVEAYTYEVFLTDILWGNV*
SI34jun09_10mDRAFT_10052299	F084734	N/A	MKKYKKKPWTDVERKMLAAHYFGQDIEAMMNMLPERTEQAIRNQVAYLRKRGVRFKQ*